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Our group
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Our group is devoted to study the interactions between Xanthomonas and their plant hosts. For this we developed tools to analyze the diversity and perform population genetics analyses, databases for effectors playing a role in the interaction and several tools to predict function as well as phylogenetically and functionally compare TAL effectors. |
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Tools
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POLLOC-V Identifies VNTR (Variable Number of Tandem Repeats) from genomes for diversity and population genetics analyses |
FASTA to TAL Derives sequences of potential Effector Binding Elements (EBE) from proteic sequences of TAL |
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TALvez Storyteller Identifies potential targets of a specific TAL effector in the genome (or promoterome) of its host plant |
QueTAL
Compares and classify TAL effectors according to their sequences with or without their RVDs (.phylogenetic. classification) or according to their potential EBE (.functional. classification) |
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daTALbase Curated relational database that integrates TALE-related data including: A bacterial TALE sequences; plant promoter sequences; predicted TALE binding sites; transcriptomic data of host plants in response to TALE-harboring bacteria |
Xanthomonas resources
News and information about Xanthomonas genomes and type 3 effectors |