- Input sequence
Upload file 1:
Upload file 2:
Upload file 3:
Select genome(s) and/or upload multifasta file(s) to scan.
- Build groups
Groups the VNTR based on the flanking regions.
Warning: depending on the number of sequences, this analysis can take up to three hours.
- Region length
The minimum and maximum size of the repetitive region
- Unit length
The range for the period of the repeats
- Copy number
The minimum and maximum number of copies per repeat
- Similarity percentage
The range of similarity percentage between repeat units.
- Score (TRF only)
The range of scores to include. Zero (0) for no restrictions.
- Error tolerance (mreps only)
The tolerance to errors per repeat. We strongly recomend to leave the default value.
- Alignment parameters (TRF only)
Descendingly stringent: 2-7-7, 2-5-7, 2-5-5, 2-3-5.
Probability of Match (PM) and Indels (PI).