TALVEZ - TALE targets finder

Update: The new available version of Talvez allows prediction of binding sites
in the reverse complementary strand of the input sequences

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TAL file:

tab separated >Talid RVDs(XX-XX-XX)

Promoters:

Promoters in FASTA format, sequences in one line

Number of targets to output:

Number of targets to output for each TAL, ranked according to score

Min score:

Minimum score allowed to report binding sites

Length RVDs before position correction:

Length RVDs before position correction, initial repetition to apply a scaled-down matrix to account for mismatches in the N terminal region

Pseudocount number:

Pseudocount number (binding probability for any base regardless of the RVD) incorporated to Positional weight matrix

RVD-DNA specificities before position correction:

format (tab -separated) RVD A C G T

RVD-DNA specificities after position correction:

format (tab -separated) RVD A C G T