daTALbase - Database for
TAL Effectors
analysis
Rice
Login
TAL effectors
TAL targets in plants (EBEs)
Orthologs
RNA-Seq/microarray
SNPs/indels
My gene lists
Input
Enter a list of TALs:
(RVD sequence, identifiers...)
TalC HD-HD-NN-NN-NG-HA-HD-NE TBv1_481
Filters
Bacteria species (3)
Xanthomonas_campestris_pv_leersiae
Xanthomonas_oryzae_pv._oryzicola
Xanthomonas_oryzae_pv._oryzae
Origin Countries (10)
Burkina Faso
-
China
Philippines
India
Malaysia
Mali
Cameroon
Korea
Japan
Strains (54)
Xcl_BAI23
Xcl_NCPP4346
Xoc_b8-12
Xoc_BLS256
Xoc_bls279
Xoc_bls303
Xoc_bxori
Xoc_cfbp2286
Xoc_cfbp7331
Xoc_cfbp7341
Xoc_CFBP7342
Xoc_l8
Xoc_rs105
Xoo_BAI3
Xoo_C8
Xoo_CFBP1947
Xoo_ITCCBB0002
Xoo_JX01
Xoo_JXOIII
Xoo_K74
Xoo_KACC10331
Xoo_MAFF311018
Xoo_MAI1
Xoo_MAI106
Xoo_MAI129
Xoo_MAI134
Xoo_MAI145
Xoo_MAI68
Xoo_MAI73
Xoo_MAI95
Xoo_MAI99
Xoo_PX0339
Xoo_PXO0314
Xoo_PXO145
Xoo_PXO1865
Xoo_PXO211
Xoo_PXO236
Xoo_PXO2684
Xoo_PXO282
Xoo_PXO348
Xoo_PXO356
Xoo_PXO357
Xoo_PXO441
Xoo_PXO448
Xoo_PXO524
Xoo_PXO557
Xoo_PXO563
Xoo_PXO602
Xoo_PXO61
Xoo_PXO71
Xoo_PXO83
Xoo_PXO86
Xoo_PXO99A
Xoo_Unknown
Input
Enter a list of TALs or genes:
Filters
In plant species (13)
oryza_nivara
oryza_glumaepatula
oryza_sativa_IR64
oryza_sativa_DJ123
oryza_sativa_Indica- 93-11
oryza_sativa_kassalath
oryza_punctata
oryza_barthi
oryza_brachyantha
oryza_rufipognon
oryza_sativa_nipponbare
oryza_glaberrima_CG14
oryza_meridionalis
Maximum rank of prediction
Input
Enter a gene name to search for its orthologs:
Filters
In plant species (13)
oryza_nivara
oryza_glumaepatula
oryza_sativa_IR64
oryza_sativa_DJ123
oryza_sativa_Indica- 93-11
oryza_sativa_kassalath
oryza_punctata
oryza_barthi
oryza_brachyantha
oryza_rufipognon
oryza_sativa_nipponbare
oryza_glaberrima_CG14
oryza_meridionalis
Input
Enter a list of genes:
(ex:LOC_Os01g01160)
Filters
Select a comparison of treatments (77)
BLS256x24hpi versus H2Ox24hpi
BLS256x2hpi versus H2Ox2hpi
BLS256x4hpi versus H2Ox4hpi
BLS256x8hpi versus H2Ox8hpi
BLS256x96hpi versus H2Ox96hpi
PXO99Ax24hpi versus H2Ox24hpi
PXO99Ax2hpi versus H2Ox2hpi
PXO99Ax4hpi versus H2Ox4hpi
PXO99Ax8hpi versus H2Ox8hpi
PXO99Ax96hpi versus H2Ox96hpi
Osj_Rxo1xXoc versus Osj_Rxo1xMock
Osj_Rxo1xXoc versus Osj_wtxXoc
Osj_wtxXoc versus Osj_wtxMock
XooBAI3 versus H2O
XooBAI3 versus XooBAI3_Dtalc
XooBAI3_Dtalc versus H2O
IRBB5xPXO86x12_hai versus IR24xPXO86x12_hai
IRBB5xPXO86x24_hai versus IR24xPXO86x24_hai
IRBB5xPXO86x3_hai versus IR24xPXO86x3_hai
IRBB5xPXO86x6_hai versus IR24xPXO86x6_hai
IRBB7xPXO86x12_hai versus IR24xPXO86x12_hai
IRBB7xPXO86x24_hai versus IR24xPXO86x24_hai
IRBB7xPXO86x3_hai versus IR24xPXO86x3_hai
IRBB7xPXO86x6_hai versus IR24xPXO86x6_hai
BAI3xIR64x11 versus BAI3xNipponbarex11
BAI3xIRBB4x11 versus BAI3xNipponbarex11
BAI3xNipponbarex11 versus MAI1xNipponbarex11
BAI3xNipponbarex11 versus BAI3DhrpxNipponbarex11
MAI1xIR64x11 versus MAI1xNipponbarex11
MAI1xIR64x11 versus BAI3xIR64x11
MAI1xNipponbarex11 versus BAI3xNipponbarex11
IR24xBLS303 versus IR24xMOCK
IR24xMAFF311018 versus IR24xMOCK
IR24xPXO86 versus IR24xMOCK
IR24xPXO99A versus IR24xMOCK
IR24xPXO99A versus IR24xPXO99AME7_DhrcU
IR24xPXO99A versus IR24xPXO99AME1_DpthXo6
IR24xPXO99A versus IR24xPXO99AME2_DpthXo1
IR24xPXO99A versus IR24xPXO99AME5
IR24xPXO99A2 versus IR24xMOCK
IR24xPXO99A2 versus IR24xPXO99AME7_DhrcU
IR24xPXO99AME1_DpthXo6 versus IR24xMOCK
IR24xPXO99AME2_DpthXo1 versus IR24xMOCK
IR24xPXO99AME5 versus IR24xMOCK
IR24xPXO99AME7_DhrcU versus IR24xMOCK
NippxBLS303 versus NippxMOCK
NippxMAFF311018 versus NippxMOCK
NippxPXO86 versus NippxMOCK
NippxPXO99A versus NippxMOCK
NippxPXO99A versus NippxPXO99AME1_DpthXo6
NippxPXO99A versus NippxPXO99AME2_DpthXo1
NippxPXO99A versus NippxPXO99AME7_DhrcU
NippxPXO99A versus NippxPXO99AME5
NippxPXO99A2 versus NippxPXO99AME7_DhrcU
NippxPXO99A2 versus NippxMOCK
NippxPXO99AME1_DpthXo6 versus NippxMOCK
NippxPXO99AME2_DpthXo1 versus NippxMOCK
NippxPXO99AME5 versus NippxMOCK
NippxPXO99AME7_DhrcU versus NippxMOCK
IR24xPXO71x24 versus IR24xH2Ox24
IR24xPXO71x96 versus IR24xH2Ox96
IRBB21xPXO71x24 versus IR24xPXO71x24
IRBB21xPXO71x24 versus IRBB21xH2Ox24
IRBB21xPXO71x96 versus IR24xPXO71x96
IRBB21xPXO71x96 versus IRBB21xH2Ox96
RNAseqNipp_B8-12 versus RNAseqNipp_Mock
RNAseqNipp_BLS256 versus RNAseqNipp_Mock
RNAseqNipp_BLS279 versus RNAseqNipp_Mock
RNAseqNipp_BLS354 versus RNAseqNipp_Mock
RNAseqNipp_BXORI versus RNAseqNipp_Mock
RNAseqNipp_CFBP2286 versus RNAseqNipp_Mock
RNAseqNipp_CFBP7331 versus RNAseqNipp_Mock
RNAseqNipp_CFBP7341 versus RNAseqNipp_Mock
RNAseqNipp_CFBP7342 versus RNAseqNipp_Mock
RNAseqNipp_L8 versus RNAseqNipp_Mock
RNAseqNipp_R105 versus RNAseqNipp_Mock
Cellulase versus Buffer
Input
Select variants dataset:
High density Rice Array (HDRA) (SNPs)
3000 Rice genomes (indels)
3000 Rice genomes (SNPs)
Enter a list of genes to search for variants in promoter:
(ex:LOC_Os12g40390)