Summary Statistics

Plots

Histogram of read lengths

Histogram of read lengths after log transformation

Weighted Histogram of read lengths

Weighted Histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Violin plot of read lengths over time

Violin plot of quality over time

NanoPlot report

Summary statistics

General summary:
Mean read quality:9.8
Total bases:50311337
Read length N50:1580
Median read length:938.0
Median read quality:9.4
Number of reads:44056
Mean read length:1142.0
Active channels:438
Number and percentage of reads above quality cutoffs
>Q5:44055 (100.0%)
>Q10:16023 (36.4%)
>Q15:8 (0.0%)
>Q20:0 (0.0%)
>Q25:0 (0.0%)
Top 5 longest reads and their mean basecall quality score
1:8423 (9.3)
2:5325 (9.9)
3:5087 (11.2)
4:5052 (10.3)
5:4852 (10.5)
Top 5 highest mean basecall quality scores and their read lengths
1:15.9 (159)
2:15.9 (8)
3:15.8 (122)
4:15.7 (153)
5:15.1 (135)




Plots

Histogram of read lengths





Histogram of read lengths after log transformation





Weighted Histogram of read lengths





Weighted Histogram of read lengths after log transformation





Yield by length





Read lengths vs Average read quality plot using dots





Read lengths vs Average read quality plot using a kernel density estimation





Number of reads generated per channel





Cumulative yield





Cumulative yield





Number of reads over time





Violin plot of read lengths over time





Violin plot of quality over time