2018-10-10 14:35:38,042 NanoPlot 1.13.0 started with arguments Namespace(N50=True, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, drop_outliers=False, fasta=None, fastq=None, fastq_minimal=None, fastq_rich=['/home/abate/test02102018/TriTaille_1250_trim_FAH71221_R1.fastq'], format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='/home/abate/test02102018/nanoplot_tri_trim_out_FAH71221_R1', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', store=False, summary=None, threads=4, title=None, verbose=False)
2018-10-10 14:35:38,043 Python version is: 3.6.0a3 (default, Jul 28 2016, 14:46:58)  [GCC 4.8.5 20150623 (Red Hat 4.8.5-4)]
2018-10-10 14:35:38,045 Nanoplotter: valid output format png
2018-10-10 14:35:38,058 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-10 14:35:54,725 Nanoget: Gathered all metrics of 17866 reads
2018-10-10 14:35:54,751 Calculated statistics
2018-10-10 14:35:54,751 Using sequenced read lengths for plotting.
2018-10-10 14:35:54,751 Processed the reads, optionally filtered. 17866 reads left
2018-10-10 14:35:54,751 Nanoplotter: Valid color #4CB391.
2018-10-10 14:35:54,753 Nanoplotter: Creating length plots for Read length.
2018-10-10 14:35:54,753 Nanoplotter: Using 17866 reads with read length N50 of 1769bp and maximum of 8423bp.
2018-10-10 14:35:57,261 Created length plots
2018-10-10 14:35:57,262 Nanoplotter: Creating Read lengths vs Average read quality plots using statistics from 17866 reads.
2018-10-10 14:36:03,077 Created LengthvsQual plot
2018-10-10 14:36:03,078 Nanoplotter: Creating heatmap of reads per channel using 17866 reads.
2018-10-10 14:36:03,555 Created spatialheatmap for succesfull basecalls.
2018-10-10 14:36:03,567 Nanoplotter: Creating timeplots using 17866 reads.
2018-10-10 14:36:05,682 Created timeplots.
2018-10-10 14:36:05,682 Writing html report.
2018-10-10 14:36:10,486 Finished!