2018-10-10 14:26:47,498 NanoPlot 1.13.0 started with arguments Namespace(N50=True, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, drop_outliers=False, fasta=None, fastq=None, fastq_minimal=None, fastq_rich=['/home/abate/test02102018/TriTaille_1250_Merged_12.fastq'], format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='/home/abate/test02102018/nanoplot_tri_out_FAH71221_R1', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', store=False, summary=None, threads=4, title=None, verbose=False)
2018-10-10 14:26:47,498 Python version is: 3.6.0a3 (default, Jul 28 2016, 14:46:58)  [GCC 4.8.5 20150623 (Red Hat 4.8.5-4)]
2018-10-10 14:26:47,507 Nanoplotter: valid output format png
2018-10-10 14:26:47,533 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-10 14:27:05,838 Nanoget: Gathered all metrics of 18829 reads
2018-10-10 14:27:05,877 Calculated statistics
2018-10-10 14:27:05,877 Using sequenced read lengths for plotting.
2018-10-10 14:27:05,877 Processed the reads, optionally filtered. 18829 reads left
2018-10-10 14:27:05,877 Nanoplotter: Valid color #4CB391.
2018-10-10 14:27:05,879 Nanoplotter: Creating length plots for Read length.
2018-10-10 14:27:05,880 Nanoplotter: Using 18829 reads with read length N50 of 1847bp and maximum of 8468bp.
2018-10-10 14:27:08,423 Created length plots
2018-10-10 14:27:08,423 Nanoplotter: Creating Read lengths vs Average read quality plots using statistics from 18829 reads.
2018-10-10 14:27:14,458 Created LengthvsQual plot
2018-10-10 14:27:14,458 Nanoplotter: Creating heatmap of reads per channel using 18829 reads.
2018-10-10 14:27:14,946 Created spatialheatmap for succesfull basecalls.
2018-10-10 14:27:14,954 Nanoplotter: Creating timeplots using 18829 reads.
2018-10-10 14:27:17,080 Created timeplots.
2018-10-10 14:27:17,080 Writing html report.
2018-10-10 14:27:21,763 Finished!