NanoPlot report
Summary statistics
|
| General summary: |
| Number of reads: | 18829 |
| Active channels: | 432 |
| Mean read quality: | 9.8 |
| Median read length: | 1775.0 |
| Median read quality: | 9.4 |
| Read length N50: | 1847 |
| Mean read length: | 1929.2 |
| Total bases: | 36325081 |
|
| Top 5 highest mean basecall quality scores and their read lengths |
| 1: | 13.7 (1722) |
| 2: | 13.5 (1783) |
| 3: | 13.5 (1842) |
| 4: | 13.4 (1753) |
| 5: | 13.4 (1805) |
|
| Number and percentage of reads above quality cutoffs |
| >Q5: | 18829 (100.0%) |
| >Q10: | 6566 (34.9%) |
| >Q15: | 0 (0.0%) |
| >Q20: | 0 (0.0%) |
| >Q25: | 0 (0.0%) |
|
| Top 5 longest reads and their mean basecall quality score |
| 1: | 8468 (9.3) |
| 2: | 6969 (9.2) |
| 3: | 5956 (8.0) |
| 4: | 5472 (9.9) |
| 5: | 5192 (11.1) |
Plots
Histogram of read lengths
Weighted Histogram of read lengths
Yield by length
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation
Number of reads generated per channel
Cumulative yield
Cumulative yield
Number of reads over time
Violin plot of read lengths over time
Violin plot of quality over time
