2018-10-03 11:27:46,838 NanoPlot 1.13.0 started with arguments Namespace(N50=True, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, drop_outliers=False, fasta=None, fastq=None, fastq_minimal=None, fastq_rich=['/home/abate/test02102018/fastq_runid_ab789d39c78be0d88e49c3b0c948a5f8224fd69f_0.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_0.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_10.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_1.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_2.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_3.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_4.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_5.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_6.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_7.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_8.fastq', '/home/abate/test02102018/fastq_runid_c77e4b634db2e22a23b057d7d9b8e63af304f7c5_9.fastq'], format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='/home/abate/test02102018/nanoplot_outFAH71221_R1', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', store=False, summary=None, threads=4, title=None, verbose=False)
2018-10-03 11:27:46,838 Python version is: 3.6.0a3 (default, Jul 28 2016, 14:46:58)  [GCC 4.8.5 20150623 (Red Hat 4.8.5-4)]
2018-10-03 11:27:46,840 Nanoplotter: valid output format png
2018-10-03 11:27:46,859 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:46,860 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:46,860 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:46,861 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:47,880 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:48,991 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:49,456 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:49,517 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:50,400 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:51,331 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:51,772 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:51,963 Nanoget: Starting to collect statistics from rich fastq file.
2018-10-03 11:27:54,795 Nanoget: Gathered all metrics of 44611 reads
2018-10-03 11:27:54,840 Calculated statistics
2018-10-03 11:27:54,840 Using sequenced read lengths for plotting.
2018-10-03 11:27:54,841 Processed the reads, optionally filtered. 44611 reads left
2018-10-03 11:27:54,841 Nanoplotter: Valid color #4CB391.
2018-10-03 11:27:54,844 Nanoplotter: Creating length plots for Read length.
2018-10-03 11:27:54,845 Nanoplotter: Using 44611 reads with read length N50 of 1646bp and maximum of 8468bp.
2018-10-03 11:27:57,557 Created length plots
2018-10-03 11:27:57,557 Nanoplotter: Creating Read lengths vs Average read quality plots using statistics from 44611 reads.
2018-10-03 11:28:03,644 Created LengthvsQual plot
2018-10-03 11:28:03,645 Nanoplotter: Creating heatmap of reads per channel using 44611 reads.
2018-10-03 11:28:04,128 Created spatialheatmap for succesfull basecalls.
2018-10-03 11:28:04,145 Nanoplotter: Creating timeplots using 44611 reads.
2018-10-03 11:28:06,704 Created timeplots.
2018-10-03 11:28:06,704 Writing html report.
2018-10-03 11:28:11,749 Finished!