2018-07-20 09:32:46,706 NanoPlot 1.13.0 started with arguments Namespace(N50=True, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, drop_outliers=False, fasta=None, fastq=None, fastq_minimal=None, fastq_rich=['/home/abate/minionjuillet2018/fastq_runid_48c8f5bccdbbdddb7a04075331cac2f994366945_0.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_0.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_10.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_11.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_12.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_13.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_14.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_15.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_1.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_2.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_3.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_4.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_5.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_6.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_7.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_8.fastq', '/home/abate/minionjuillet2018/fastq_runid_5cfe5cfd702dfc389614e596f0e73ab891e5380a_9.fastq'], format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='/home/abate/testjuillet2018/nanoplot_outlog_R2.fastq', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', store=False, summary=None, threads=4, title=None, verbose=False)
2018-07-20 09:32:46,707 Python version is: 3.6.0a3 (default, Jul 28 2016, 14:46:58)  [GCC 4.8.5 20150623 (Red Hat 4.8.5-4)]
2018-07-20 09:32:46,708 Nanoplotter: valid output format png
2018-07-20 09:32:46,748 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:32:46,749 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:32:46,750 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:32:46,752 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:32:47,124 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:32:55,608 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:32:59,614 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:00,114 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:00,289 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:03,299 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:08,895 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:09,496 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:13,045 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:13,296 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:19,199 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:20,526 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:23,992 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:33:36,455 Nanoget: Gathered all metrics of 61080 reads
2018-07-20 09:33:36,531 Calculated statistics
2018-07-20 09:33:36,532 Using sequenced read lengths for plotting.
2018-07-20 09:33:36,532 Processed the reads, optionally filtered. 61080 reads left
2018-07-20 09:33:36,532 Nanoplotter: Valid color #4CB391.
2018-07-20 09:33:36,537 Nanoplotter: Creating length plots for Read length.
2018-07-20 09:33:36,538 Nanoplotter: Using 61080 reads with read length N50 of 10018bp and maximum of 21811bp.
2018-07-20 09:33:39,982 Created length plots
2018-07-20 09:33:39,982 Nanoplotter: Creating Read lengths vs Average read quality plots using statistics from 61080 reads.
2018-07-20 09:33:47,511 Created LengthvsQual plot
2018-07-20 09:33:47,512 Nanoplotter: Creating heatmap of reads per channel using 61080 reads.
2018-07-20 09:33:47,970 Created spatialheatmap for succesfull basecalls.
2018-07-20 09:33:48,005 Nanoplotter: Creating timeplots using 61080 reads.
2018-07-20 09:33:50,896 Created timeplots.
2018-07-20 09:33:50,897 Writing html report.
2018-07-20 09:33:57,020 Finished!