2018-07-20 09:25:02,424 NanoPlot 1.13.0 started with arguments Namespace(N50=True, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, drop_outliers=False, fasta=None, fastq=None, fastq_minimal=None, fastq_rich=['/home/abate/testjuillet2018/fastq_runid_811f21bf2743cfd42095e1acef4afa311f9168b6_0.fastq', '/home/abate/testjuillet2018/fastq_runid_811f21bf2743cfd42095e1acef4afa311f9168b6_1.fastq', '/home/abate/testjuillet2018/fastq_runid_df85199cd2f065f50724aadaabf5b7cb53ab451c_0.fastq'], format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='/home/abate/testjuillet2018/nanoplot_outlog.fastq', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', store=False, summary=None, threads=4, title=None, verbose=False)
2018-07-20 09:25:02,424 Python version is: 3.6.0a3 (default, Jul 28 2016, 14:46:58)  [GCC 4.8.5 20150623 (Red Hat 4.8.5-4)]
2018-07-20 09:25:02,436 Nanoplotter: valid output format png
2018-07-20 09:25:02,480 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:25:02,481 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:25:02,483 Nanoget: Starting to collect statistics from rich fastq file.
2018-07-20 09:25:12,005 Nanoget: Gathered all metrics of 8480 reads
2018-07-20 09:25:12,026 Calculated statistics
2018-07-20 09:25:12,026 Using sequenced read lengths for plotting.
2018-07-20 09:25:12,026 Processed the reads, optionally filtered. 8480 reads left
2018-07-20 09:25:12,026 Nanoplotter: Valid color #4CB391.
2018-07-20 09:25:12,027 Nanoplotter: Creating length plots for Read length.
2018-07-20 09:25:12,028 Nanoplotter: Using 8480 reads with read length N50 of 5004bp and maximum of 21013bp.
2018-07-20 09:25:14,695 Created length plots
2018-07-20 09:25:14,695 Nanoplotter: Creating Read lengths vs Average read quality plots using statistics from 8480 reads.
2018-07-20 09:25:21,597 Created LengthvsQual plot
2018-07-20 09:25:21,597 Nanoplotter: Creating heatmap of reads per channel using 8480 reads.
2018-07-20 09:25:22,059 Created spatialheatmap for succesfull basecalls.
2018-07-20 09:25:22,066 Nanoplotter: Creating timeplots using 8480 reads.
2018-07-20 09:25:24,894 Created timeplots.
2018-07-20 09:25:24,895 Writing html report.
2018-07-20 09:25:30,124 Finished!